Name MS-BioGraphs – MSA500 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MSA500 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed Yes Number of Vertices 1,757,323,526 Number of Edges 1,244,904,754,157 Maximum […]
high performance computing
41 posts
Name MS-BioGraphs – MS200 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MS200 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed No Number of Vertices 1,414,493,449 Number of Edges 502,930,788,612 Maximum […]
Name MS-BioGraphs – MSA200 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MSA200 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed Yes Number of Vertices 1,757,323,526 Number of Edges 500,444,322,597 Maximum […]
Name MS-BioGraphs – MS50 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MS50 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed No Number of Vertices 585,603,088 Number of Edges 124,783,559,600 Maximum […]
Name MS-BioGraphs – MSA50 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MSA50 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed Yes Number of Vertices 1,757,323,526 Number of Edges 125,312,536,732 Maximum […]
Name MS-BioGraphs – MSA10 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MSA10 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed Yes Number of Vertices 1,757,323,526 Number of Edges 25,236,632,682 Maximum […]
Name MS-BioGraphs – MS1 URL https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-MS1 Download Link https://doi.org/10.21227/gmd9-1534 Script for Downloading All Files https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-on-IEEE-DataPort/ Validating and Sample Code https://blogs.qub.ac.uk/DIPSA/MS-BioGraphs-Validation/ Graph Explanation Vertices represent proteins and each edge represents the sequence similarity between its two endpoints Edge Weighted Yes Directed No Number of Vertices 43,144,218 Number of Edges 2,660,495,200 Maximum […]
Repository https://github.com/DIPSA-QUB/MS-BioGraphs-Validation Explanation We provide a Shell script, validation.sh, and a Java program, EdgeBlockSHA.java, to verify the the correctness of the graphs. Each graph has a .ojson file whose shasum is verified by the value retreived from our server. Files such as offsets.bin, wcc.bin, n2o.bin, trans_offsets.bin, and edges_shas.txt have shasum […]
UKRI EPSRC Grant The design of efficient and scalable scientific simulation software is reaching a critical point whereby continued advances are increasingly harder, more labour-intensive, and thus more expensive to achieve. This challenge emanates from the constantly evolving design of large-scale high-performance computing systems. World-leading (pre-)exascale systems, as well as […]
Mohsen Koohi EsfahaniSupervisors: Hans Vandierendonck and Peter Kilpatrick Thesis in PDF formatThesis on QUB Pure Portal Graph algorithms find several usages in industry, science, humanities, and technology. The fast-growing size of graph datasets in the context of the processing model of the current hardware has resulted in different bottlenecks such […]